CDP: CYTIDINE-5'-DIPHOSPHATE
CDP is a Ligand Of Interest in 3EE3 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3EE3_CDP_C_162 | 97% | 43% | 0.054 | 0.967 | 1.26 | 0.97 | 2 | 2 | 1 | 0 | 100% | 1 |
| 3EE3_CDP_D_163 | 97% | 44% | 0.059 | 0.971 | 1.19 | 1 | 2 | 3 | 0 | 0 | 100% | 1 |
| 3EE3_CDP_E_164 | 96% | 39% | 0.057 | 0.964 | 1.27 | 1.11 | 1 | 4 | 0 | 0 | 100% | 1 |
| 3EE3_CDP_A_160 | 94% | 35% | 0.065 | 0.962 | 1.32 | 1.26 | 3 | 6 | 0 | 0 | 100% | 1 |
| 3EE3_CDP_F_165 | 89% | 38% | 0.07 | 0.947 | 1.2 | 1.23 | 1 | 3 | 0 | 0 | 100% | 1 |
| 3EE3_CDP_B_161 | 83% | 46% | 0.075 | 0.932 | 1.14 | 0.96 | 2 | 2 | 0 | 0 | 100% | 1 |
| 3GPA_CDP_C_201 | 85% | 61% | 0.117 | 0.982 | 0.76 | 0.75 | 1 | - | 1 | 0 | 100% | 1 |
| 6SDK_CDP_C_301 | 100% | 5% | 0.043 | 0.987 | 3.72 | 1.58 | 12 | 6 | 0 | 0 | 100% | 1 |
| 3BOS_CDP_B_300 | 100% | 55% | 0.046 | 0.988 | 0.92 | 0.81 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8VHP_CDP_D_809 | 98% | 52% | 0.051 | 0.975 | 0.89 | 0.96 | - | 2 | 2 | 0 | 100% | 1 |
| 2VBU_CDP_A_1133 | 96% | 45% | 0.078 | 0.989 | 0.89 | 1.22 | - | 3 | 0 | 0 | 100% | 1 |
| 1ORR_CDP_B_1301 | 96% | 34% | 0.06 | 0.97 | 1.28 | 1.32 | 3 | 6 | 0 | 0 | 100% | 1 |
